How does the flat rate scheme work?
You still charge your customers VAT at the normal rate and issue normal VAT invoices. What changes is what you pay HMRC: instead of the VAT charged less the VAT on your costs, you pay a single percentage of your gross turnover. The percentage depends on your trade sector, and the current figures, along with the turnover limit for joining, are on gov.uk.
The trade-off is that you cannot reclaim VAT on most purchases. The percentage is set below the standard rate precisely because it assumes some input VAT you are giving up. The exception is a single capital asset purchase above a set amount, on which VAT can still be reclaimed.
There is a first-year discount for businesses new to VAT registration, and a 'limited cost business' rule that applies a higher percentage to businesses that spend very little on goods. That rule caught a lot of service businesses when it was introduced, and it is the first thing to check before joining.